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时间：2015-04-14 03:45
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Join Legend
Serious alignment problem, requires review.
Zero, or more than one, overlaps
Half dove-tail &50 bp
Alignment identity &98%
Alignment length &50 bp
&2 gaps, each gap &25 bp, not marked as an SSR
&0 gaps, each gap &50 bp, not marked as an SSR
&0 gaps, each gap &500 bp, not marked as an SSR
&0 gaps, each gap &500 bp, marked as an SSR
Minor alignment problem.
Exactly one overlap
Half dove-tail &0 bp and <=50bp
Alignment identity &99.1%
Alignment length &2000 bp
&0 gaps, each gap &25 bp, not marked as an SSR
&0 gaps, each gap &50 bp, not marked as an SSR
&0 gaps, each gap &500 bp, not marked as an SSR
&0 gaps, each gap &500 bp, marked as an SSR
Excellent alignment, meets all defined criteria.
Exactly one RuleInfo
Half dove-tail &=0 bp
Alignment identity &=99.1%
Alignment length &=2000 bp
&=0 gaps, each gap &25 bp, not marked as an SSR
&=0 gaps, each gap &50 bp, not marked as an SSR
&=0 gaps, each gap &500 bp, not marked as an SSR
&=0 gaps, each gap &500 bp, marked as an SSR
Certificate submitted, not yet approved.
Certificate submitted and approved.
Valid, contained clone
Join not evaluated due to one accession not being finished.
Curator Links
Alignment for AC and AC
Mismatches = 0, Gaps = 0, Length = 11122
Percent identity = 100%
Score = 2.205e+04 bits (11122), Expect = 0
0 BAC and 0 Fosmid bridging clones.
0 BAC and 0 Fosmid concordant clones.
0 BAC and 0 Fosmid discordant clones.
gatccatttggcaagctgtaaagttctggtgtgtccttgggtcaaaggagtaattcggga 11063
............................................................ 171524
gtgaggattaagtcataagcttcctagagcatttatgatatctcttttttcatagaaagc 11003
............................................................ 171464
atctgtgaagcacattttttttagattgggcatttgagagcctgcctctttcaggctaaa 10943
............................................................ 171404
gcattctgagccttactgaaagaggacacatagccaatgaccctttggtgagaactgaaa 10883
............................................................ 171344
agtctgagttcacaatgctcagactgatatggtctgactttcccttttaggggagaagaa 10823
............................................................ 171284
agaactacagctcctcttttgctccgtgatccttttgaaattgattttgataagatgtat 10763
............................................................ 171224
atatttgtggcctcctaggacagaagggtcacaaagcgacacccaaattcacattgtaat 10703
............................................................ 171164
gattgttttctccctgggcaagagagagcaagtatcatgtcctgtgtttgagatgttacg 10643
............................................................ 171104
tgtaattactttgcataacagggaatgaagtggcacctccatttggaattcatggatgta 10583
............................................................ 171044
tgaatcccactaggaaaatagccaatgctgtgggctcccatttttgtattaatggaagtt 10523
............................................................ 170984
atgtgtttctctctctttggcagtagaaacatgttttgagcactacttagtaaaaacagg 10463
............................................................ 170924
gtggttgatatcctcttggggtgatgacaagaatttgacacctctatggggactttctcc 10403
............................................................ 170864
atctggagataactcaatgccttcttgttctgcaggagaagtttacagggctatttgggt 10343
............................................................ 170804
attagaggcactactctctctcctcctattaaaagtagcatttcagagaatctcatgagg 10283
............................................................ 170744
agacatgaaatgtctgaggctctcttcatgaggaatagagtggtttatgtgcacttttct 10223
............................................................ 170684
ctaggcatggatcatggtttgccactctcatgttctgaatgggaagcttgactgtcccat 10163
............................................................ 170624
tgttcagaacggtccttttctgataagataaaatagatttggatggtctgtattcacctt 10103
............................................................ 170564
ggtatggtggaggacttctgaggccctcctcatgagatggtgagcatccaaaggctcctt 10043
............................................................ 170504
tagcagtatcagaattagtgagggttatggtagtcacagttttaagatttgcaacttttt 9983
............................................................ 170444
ttcttagaagtgcaagatcttaccagcattttggaatagtggcagtgcttccacctagca 9923
............................................................ 170384
tctttttagaggacaggtttcaggcctgcttgatctacagaggaaaacattagtcttatt 9863
............................................................ 170324
ttttgcagtataggatttttgggacaaccccttggatgaggagaataactgagatctttc 9803
............................................................ 170264
ttataaggaatgctagatgtgaaactcaattgtgaagattaaaagggggagatgcttctt 9743
............................................................ 170204
ggaggagtagaggtaggactggattcctttcagcatacttggaagatgtgaggctacctt 9683
............................................................ 170144
tggcagaagagatgcattttaaaacatcaagttctgagaggcagtatctgatatctcctt 9623
............................................................ 170084
ctgaaaatgagacatgtttcaatgtcctttggttagaattggaaatactcgggctcttcc 9563
............................................................ 170024
tctgataagagtaactatctggccatcttcatgagaaggggttggaattaagtccctgtc 9503
............................................................ 169964
tgtacaaagtgacagtctgggaaattctgttgaaaaggaagtacccacagtgtcttttct 9443
............................................................ 169904
agatggcataggttctagaatccccttagctagttgagaaagttctagatattcctgggc 9383
............................................................ 169844
taatgttggtgttccaaggatcccttgatcagatactaaagggctcagcccatctacatt 9323
............................................................ 169784
gtgtttcataagacacagagaccctggaacagatagcaaagattctagagaccctgccac 9263
............................................................ 169724
agattctgaactcttagaaacagattggttacatggcagagattcttccaactctggact 9203
............................................................ 169664
aagtgttgaagaaactggtaatctgggagaattttatgtggctgacaaagattctatgat 9143
............................................................ 169604
ctcttgggtgacagatggtatttcctcacggttttgcatacttggcattgtttctagttt 9083
............................................................ 169544
ttccttcgcagaattagaaagtccaagatcttaggatcagatggtgaatatcctaaagcc 9023
............................................................ 169484
gcatttttctaacaaggtcctggagactcttgggataacaaggaagtttctgaaggccgt 8963
............................................................ 169424
tgggcagatgttgatgttcctactacaccatgacaagacagggaaggtctctgactcaat 8903
............................................................ 169364
acgaaaggttgtgacactctcaaatataattggacagataaaggtgatcctagatgcact 8843
............................................................ 169304
atggtagatgctgaaaattccaaagctcctggtgtaatatttgctattcctggcttgtgt 8783
............................................................ 169244
tttgtacaggtgcaacctttcatattctcctctaaaggacaggcaagggcctccagcttt 8723
............................................................ 169184
ttgaacagataacaaaggtcctggattcacgtgaacagatagggacattgtcaaaagctc 8663
............................................................ 169124
tagggtagatcatagagatcctagggttccctgtccagataaagaaattgccatggatct 8603
............................................................ 169064
tttggaagaacctgacatatctgaagcagttggatctgttttttgtaccctttgtggagt 8543
............................................................ 169004
attcaaatactcatttggtccctggtatgaagtcaaaggcccctctgtaggtttagagat 8483
............................................................ 168944
atctaaaggttcttctgtgtaaggaaaggaatcaaaaggattagggaagaaagtaatgaa 8423
............................................................ 168884
ataagttgggcaaaaattgcaagtgccagaagtgagtcattgtatatcacatatcctgag 8363
............................................................ 168824
atagctgttgaattttttttgtgcacctgatgcaaatgaggaatattctagagtccccta 8303
............................................................ 168764
ggaagatggcaaaggttctacagagccttgtgcagttgccaaaatactcagagattcttg 8243
............................................................ 168704
gtcagatctcaaaatccttgcaatattttgagtagggtgggtatatcactgacacactga 8183
............................................................ 168644
ggaatatggtgagtctgctactgtgtagtgtgtagatgtggactgagttcctatacattg 8123
............................................................ 168584
tttatgtaaagaaggatttgagagcttttgggaagttgtagattgttgtatatacctttg 8063
............................................................ 168524
tggacatgtggacagatataaggtcctctttgcagagagaaagggactcaaactttcatg 8003
............................................................ 168464
agaataatcagaagatgctggagtcacttgttaagtggaaaaaagacccagaggattatg 7943
............................................................ 168404
agaacattcagaacattgtgatgtattcatcattgcctatgctgagatagaaagtttcag 7883
............................................................ 168344
aggtccctgggcagattacaaaggtactggattcccttggccaaatgggaaggtctctgc 7823
............................................................ 168284
atctccttggtacaatgttattgtctaccaagttttggaggtcatggtggcaaagttcct 7763
............................................................ 168224
agagctgatgaagtagtctgagaagatgttacatcttctctcactctttgaaaatgtcct 7703
............................................................ 168164
aaaatactctgtgattctttatattgtgacaatatccctgtgaaacctgttgaattttct 7643
............................................................ 168104
agatttctttggttgaagaaaaaataactttatatgcataaagttccgtcttttgccctg 7583
............................................................ 168044
gaaatttttgggggcttttgaaaagatggaaaagcttctagaaccactgtaggaggtaca 7523
............................................................ 167984
agatgctcctgagaacccagtagaggtgggcaatgtcctacatctgatggttaaggacaa 7463
............................................................ 167924
aagtattcttgagatttctggaaaggtaggaaatgtccagtttcccttgggaaagctggg 7403
............................................................ 167864
gatttttgtgcaaaattttggacagttggcgaaaattcataactgtctgcaaagaagttg 7343
............................................................ 167804
gagcattcaactatcttgagcttatgaaacattttgtgcagtccactgtttagatgtggg 7283
............................................................ 167744
cagtttaggagacccttaggcagaacagaaatgtccaaaaacctcttgggaagatgaaga 7223
............................................................ 167684
acctacagttccttgtgaagatgaagaaatttccagaggcctttgatcaattgacataga 7163
............................................................ 167624
ttctggtagcacttgagtattttgcatagaccccaatcgtcttggggtgggaggcaaagt 7103
............................................................ 167564
tcccacagtctgctttacagatatgtactttcctactgtggcttgtgcagataaacaatg 7043
............................................................ 167504
ccccctcagtgccctgagaatacaaggaagaccctagaatcatgtctttagttttagtca 6983
............................................................ 167444
ctttcagacttctttcttgcgatagacaagaatcccacagttccttgctaagatctcaaa 6923
............................................................ 167384
gatgatggtggcacatgtagtgatatagtaagattcagatgcagtccagcacatctggag 6863
............................................................ 167324
ctgtctgaagtccctcagaaagatggagaatattcatttgcttctgattttgctggagaa 6803
............................................................ 167264
aaagctgaatgcattagagccccttcagcaggtcctgagtgatgtgtcattgcctgggct 6743
............................................................ 167204
aagatggaatgtgtcaggccccctggattgattgcgaatatacttgattccctggaacag 6683
............................................................ 167144
atgggaatatttctacacctccttgagtaaaaaaatgaatgtctgccaggttcttgaggt 6623
............................................................ 167084
gatgatggcaaacttcctagagtaagcaaaacagatttagaagatctgacatcctctttc 6563
............................................................ 167024
actctaggcaaagggcccatggtagtctctttgtgtttacattgtcccaatcccaatata 6503
............................................................ 166964
cctgttgaatcagtcgaaggttctggatacctttggatggatgacacagaactttgcaca 6443
............................................................ 166904
tgcaaatttccaattgcaactgtgcaatttttcttttacccttaagaagttagcaaatgt 6383
............................................................ 166844
tctacatttacagtgatagtggatatccctgaccacctggtgcagataggtagtgttctg 6323
............................................................ 166784
gataacttgggaaatacaaaaacttctcctgattttcctggctagagagaacatattcat 6263
............................................................ 166724
tagtctgtggctaacatgatgagcattgtaagttgagcagatggagaaaatgtgagagcc 6203
............................................................ 166664
ctctagtaattagatggatgtttgaacgaatttggtagagaagacagagtacctataggt 6143
............................................................ 166604
tcttgtttgggtgtgtacagagacccttaggcagatagagaagttcccagaaccctttgt 6083
............................................................ 166544
gcagatgaaaaagatcctaaccttccttctgcaggtcaaaaattcccagaagtacttgaa 6023
............................................................ 166484
cagactggaaatgtccttgttcctgcttatcactttctttgtaacctagagtctccgggc 5963
............................................................ 166424
tacatgggaaaatttcttcaactccctgggcagctatgggatgtccctacatggattctg 5903
............................................................ 166364
aattcaggtaagattgtccagacacctgagtagatgatgagtgtaatgaagaaatttgtg 5843
............................................................ 166304
cagatacattcagctcaagagttgcttatggatatagggaagttgtgacaagtttccgca 5783
............................................................ 166244
aagatatggaggggctcgactagcttgtgttggtgagaaatggccatggggctttgggac 5723
............................................................ 166184
atgttgcaatgtttctgttgcccttagcatacatgaagacattccccaagaacctgagaa 5663
............................................................ 166124
tgaagacaaatgtttatgagtacactgggcagaatctgatattcccagaatctcttggga 5603
............................................................ 166064
cgatgatgactgatcaaaagactgttgagtatatggtgaaaggcctatagaagcctcaac 5543
............................................................ 166004
atatatgctaagtttggtagatagcaaatgtgctagatccttgggactacaaaataagac 5483
............................................................ 165944
tcctgagatcattggtcatattgtgaatgtcctgtatgacttgaaggatgtggcaaaagg 5423
............................................................ 165884
cctgtagtcccttgaacagatggtgagttttcctgagattctaccatgtgtgttgagttc 5363
............................................................ 165824
cctagcttcttttggaaagatgccgaatgttctaaaaaaccctgggaaagatggcaaagc 5303
............................................................ 165764
acccatagtttcttggacaggtatcaagtgttctagagttgttttcttacatctcacagt 5243
............................................................ 165704
tattgaattgcctgatatagtttgctagtttgtggaagtttctgagaacatcatagagaa 5183
............................................................ 165644
gttgaggatttcactttcacttgggaatatgacaatgttgttgagattttttggtttttg 5123
............................................................ 165584
gggtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 5063
............................................................ 165524
gtgtgtgcttgtgtttgtttgtttgtttttatgtcctggtggatgaagaagatctttttt 5003
............................................................ 165464
cagatggaaatttttctgatttcctgttttcaaatttgggagttagcataacccctgtag 4943
............................................................ 165404
gaggcaaaggatctgtagttccttggaaacatggcaaggtatacagatattctactatgt 4883
............................................................ 165344
atgatgagtgccctaccttcttctggaaagatgcagaacgctctaatttccctgtggtat 4823
............................................................ 165284
aactaaaaaaccctcagtcccctggacagtacagattgttctagaggtctttgtttacaa 4763
............................................................ 165224
ctgacaattgttagatttcctgttgtagtgtgaggagatgatggtggtgcagatgatgaa 4703
............................................................ 165164
ggtttcacattccctttggaagataacaatgtttccttagttccctgggtagagggagaa 4643
............................................................ 165104
gatatcatagcctctgtttcagatggtggatgtcatcgggtatcttgcaaagatagagaa 4583
............................................................ 165044
aatgtataaggcttctgaaaagaactgaaatttttcacaggtcctggttcagatggtgaa 4523
............................................................ 164984
attttagagtcctagtttcagatttgggtagtcccatagtccttcgaagagataaagaat 4463
............................................................ 164924
gtttctcagcccctttattagatggaaatatttgagccatcctatgagcaccttgagtag 4403
............................................................ 164864
atcctaaaggccctgttttacgtcttgatggttctacagtcccctgtggtatatagactg 4343
............................................................ 164804
tctcagaatgtctttttcttatttgtattttgtcccttccttttgggatgatataaaaga 4283
............................................................ 164744
ctctagggtcccttgtgccagtgatgacatttgaagagttctttgcaaatggaaatacct 4223
............................................................ 164684
agtgtagatggtgaagaatgcagagtctgtttagaaggtgtgtaagtgggcagtggtcct 4163
............................................................ 164624
tggatatttaccaaagtttctaaggcctgggaagaaaatgagtaaattttctgagcattt 4103
............................................................ 164564
ggtgcagtaagtgagtcttttccaccatcctaggtagatagcaaagaaccttgatgccct 4043
............................................................ 164504
tggcatgatgatgatgatgatgatgataccaaagcctcagtagcaatagcaggtaaggaa 3983
............................................................ 164444
attgctacaggatcctacccagagagcatgttttttggaaaaacagagacatttttcaaa 3923
............................................................ 164384
tgtcctggagatttctgaggatataaatatgtccacatatccacatccacagatggcaaa 3863
............................................................ 164324
tgtcctttataaaccttagaagatgaggaagttgccatatcacctggtcaagaaagagaa 3803
............................................................ 164264
tgagagttccctgtttagatgtggtgagttctggagtctgttgtgcagttaaggatattc 3743
............................................................ 164204
ccacactcccttgaacagaagacaaaagtgctacacttcattctgaggatgaggttgttc 3683
............................................................ 164144
cctcttgccattgggtgagtgacattacatttaggggagaatctgagtcatactgagata 3623
............................................................ 164084
aatctagaactccatgaatgtggggaaaatttgatggcatatcatgatataatggtgaaa 3563
............................................................ 164024
ggctcacaggctctgaagccacctgtttgggtccaggagctacaatggctgaaagggaaa 3503
............................................................ 163964
ttggcagggatcctggtctaagtggcaaagttcctaccatctcttgggcaggttggcagg 3443
............................................................ 163904
ttctgagtttactttggagagataacaatggtaataaattctcttgagtacttggtgaag 3383
............................................................ 163844
tagcagctgtactctgggtagttgtggaacaatccacaggcctttgcaaggacatcaaaa 3323
............................................................ 163784
ttcctgaaaactcatgagttgagattccatgtcctgaaactcattgtgctgatgaggaaa 3263
............................................................ 163724
gatccagatctcctggaaggtggagtgaatgtcctgaataactttttgaagatggaatat 3203
............................................................ 163664
ttttctaaacactttggccagatgacaaagttctgtagttccatgggcacccagatatcc 3143
............................................................ 163604
tgggaaaaatcctgaaaaaccaaaacacctttgcataggtgacaaagtttctagatgccc 3083
............................................................ 163544
atggttaaataatgatggtctcacatatcctagagcagatggtaaatatcctacaacaat 3023
............................................................ 163484
aatgttttagtcagaagcgtttttagatctttagaagatatgaaaattttctggtgtgtt 2963
............................................................ 163424
taggctaaagacaagttctagatgatttttttagatgtggactttccctcaggcccttga 2903
............................................................ 163364
tttcacaaaggagattgtgtagtcctgaagtctgatttgcaaaaggacaaattaccttaa 2843
............................................................ 163304
gcatggtcaaaatgttctgcatcatttgagaaagatgaagaaatttcctgggccagatag 2783
............................................................ 163244
taaacacataagagccttttggttagataatcttgagcctttttggggaaatatggattg 2723
............................................................ 163184
tccaacatgccctttggtagactgaagatgtgagactcacctgaggagaaattgtagctt 2663
............................................................ 163124
ttgatgtttctttggcatcaggggatgtttcaagtctccccccccccttttttttttttt 2603
............................................................ 163064
ttagaaaatgttctgtagtctcctttgttagaaagatcaaatcttaacctgttttttttt 2543
............................................................ 163004
tcttcttctataaactggatgactgtattattttggtagagggaaaatgtctactacttc 2483
............................................................ 162944
ctaccagagaaggcatggaaaagaaacactcttgggtagatggagataattgtaaagcac 2423
............................................................ 162884
cttgttcaaatatcacaaatcctatgaccttctgcacagatggggaaggtcttaatatgt 2363
............................................................ 162824
cttttgtaagtgtgcaagtcttaaccttggctttaaaatgaggggaaggccctagagata 2303
............................................................ 162764
cctgtgtagatatggtttcttctagagcatcatggacaagtgtaaaagatctaagagcct 2243
............................................................ 162704
cataggcaggtagtgaaatttcactacctccctgtctaatgaaagtggcatctccttaga 2183
............................................................ 162644
gcatcatggataggtgtataaggtataaaatccccatgggcaggtagtcgaatttcttga 2123
............................................................ 162584
cctccttgtgtactagtggaagttccaagaaacttttcttcagatggaaaagtggataac 2063
............................................................ 162524
aacttccttatagaattttcaggtgtcatagacagcttgatgggcaaaacagcttccatg 2003
............................................................ 162464
gggccttttgaatatgaattagaacccagaggatttttggcatttgaaaatttctagaga 1943
............................................................ 162404
cttatgctggcatgaagaaggaccaacaggcttttgtgtaggggggtaagaatctatagt 1883
............................................................ 162344
atcttgtttagttggggaagaaggctgatcctccttaggtgatagggaagatctaatagt 1823
............................................................ 162284
ctcctataaagtttggggcagctcaaattttctgaatttggagggatgctgaggaccctc 1763
............................................................ 162224
ttctttagagttcagagtgttaactggtatggtgtccactctaagttgccctttgaaaga 1703
............................................................ 162164
ttgagaaggtctcagactgcctgtggaagatgctgatggttctagttcacttcctgtatg 1643
............................................................ 162104
tgcagaagcgaaaggccttttggaagactcaggaatttctaccacgtcttgagtatgtat 1583
............................................................ 162044
ggaactcacaagatcctattcttggaatggcaaatatccttgagctcctggtgtaggtgt 1523
............................................................ 161984
ggacatttttctctttccttgagcatttattagaggtgtgaggctcacttgggacattgt 1463
............................................................ 161924
gattgcatgtatttccctttggactgaaatagatgatgtgagcacatttcttattggtag 1403
............................................................ 161864
aggactttgaaaggcctcttggtttcatggagaatgactgaaattcccttggtcaggagg 1343
............................................................ 161804
gtcaggtctcaaaataactctagtaggaacagattgcataggacactttggggggaaaga 1283
............................................................ 161744
gaaacatctttggatgtctttctgagaagactttgctctctgccctgttttggcagctgg 1223
............................................................ 161684
caaacattttcaactctgctagggaaaggatgtgggacatgatacttttgggacaaatca 1163
............................................................ 161624
ctgacattacccttgggggaaaaggtttagagccccctttatgtgacttacactcctgtt 1103
............................................................ 161564
gtaggtcctcttgaccagagggatcttctccaaaatgctttggaagaaaattggaaagaa 1043
............................................................ 161504
gagagtcatgtagtgtaatggataaccttttggaaagccttctggaagagcaggcattat 983
............................................................ 161444
gattttactgtcagcacaagtgagtagtctttgagatgcctgtgcagatgttcaatgtcc 923
............................................................ 161384
catagagtattggaaaaatttggatagttccattacctcttggctggataaggaaagacc 863
............................................................ 161324
ctgagcattttggggagaattaggagatcccagatatccttggctagatcgggaagggtg 803
............................................................ 161264
taaggaaccttgaatgtttggagaaaattcctgtccatgttggccagcagaagagtgggc 743
............................................................ 161204
agaagatgccccaggcactgtgtgatcttctttgaactttttaatggcatctccattacc 683
............................................................ 161144
gtgtttggaagatattacaggcattcaggcatccaactagtaaaaatccataggttcttc 623
............................................................ 161084
acccagtggacataggctggcttcttttcacctgtctatgcatgggcacagcagatgagg 563
............................................................ 161024
ccactcattttctagtggaaggctgtaaaacagattgtctggtatccctggttagaggat 503
............................................................ 160964
tactcgtgaactcaggaaaactcagaggaagtgtaaatgtccattttatgttctctttta 443
............................................................ 160904
gatccttcagagggtccagggtcctgttattggatgaatgctttataagagctttgggtt 383
............................................................ 160844
tctgtaacttttctgtaacatgagatcaggtttttttttttttttgtttttttttttgaa 323
............................................................ 160784
tctctcgtcttcatagggttttgggcacctgaacttgtgccgattctgtatatggagccc 263
............................................................ 160724
tggagtcacaaaatccctcgagtctctgctggccaactgcttcccctgttagtttaaggt 203
............................................................ 160664
gtaaaatccagttgggggacagtgaagggagtccaaggctatggaggctgtgaaatcagt 143
............................................................ 160604
tgcggtagggtatcactattctttggactacacttaagggtgttccaggcactggaggat 83
............................................................ 160544
gtgaaacctgtggtatatggtcatagtgtcaagtctgggctgaggctcactgctatttct 23
............................................................ 160484
ccacatgtcttgctatttgatc 1
...................... 160462
TypePoint1Point2Orient1Orient2CuratorCommentTimeIdAlignmentReleases
Switch Points
A11123171583--chenhcTaxid 10090 chrom Y Primary assembly 17:04:13.2607121328380GRCm38, MGSCv37
A1160461--chenhcTaxid 10090 chrom Y Primary assembly 15:02:48.2669110228380
IdTypeDateWhodidComment
41898InitHasAlign06/30/:00f_old_db
181970CreateSwitchPt11/20/:13chenhctpf_builder 1.6
Toolkit wrapper version: built Nov 19 2008 using /netopt/ncbi_tools64/c++.by-date//GCC401-Release64/lib
234303CreateSwitchPt10/31/:48chenhctpf_m_Builder 1.51 Toolkit wrapper version: built Oct 12 2011 using @c_ncbi_runpath@
Accession%idPosition (strand) Accession%idPosition (strand)
Fosmid Ends
Accession%idPosition (strand) Accession%idPosition (strand)
hAT-Charlie
hAT-Charlie
hAT-Charlie
hAT-Charlie
hAT-Charlie
TcMar-Tigger
TcMar-Tigger
TcMar-Tigger
TcMar-Tigger
TcMar-Tigger
TcMar-Tigger
TcMar-Tigger
MuRRS4-int
MuRRS4-int
IAPEY3-int
IAPEY3-int
IAPEY3-int
IAPLTR3-int
IAPLTR3-int
IAPLTR3-int
IAPLTR3-int
IAPLTR3-int
IAPLTR3-int
IAPLTR3-int
IAPLTR3-int
IAPLTR3-int
Low_complexity
Low_complexity
Low_complexity
Low_complexity
Low_complexity
Low_complexity
Low_complexity
Low_complexity
Low_complexity
Low_complexity
Low_complexity
Low_complexity
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Y-chromosome
Y-chromosome
Y-chromosome
Y-chromosome
ERVB7_2B-LTR_MM
RLTR31D_MM
RLTR31D_MM
RLTR31D_MM
RLTR31D_MM
MERVL_2A-int
MMERVK9C_I-int
hAT-Charlie
TcMar-Tigger
TcMar-Tigger
TcMar-Tigger
MuRRS4-int
MuRRS4-int
MuRRS4-int
MuRRS4-int
MuRRS4-int
IAPEY3-int
IAPEY3-int
IAPEY3-int
IAPLTR3-int
IAPLTR3-int
IAPLTR3-int
IAPLTR3-int
Low_complexity
Low_complexity
Low_complexity
Low_complexity
Low_complexity
Low_complexity
Low_complexity
Low_complexity
Low_complexity
Low_complexity
Low_complexity
Low_complexity
Low_complexity
Low_complexity
Low_complexity
Low_complexity
Low_complexity
Low_complexity
Low_complexity
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
MurSatRep1
Y-chromosome
Y-chromosome
Y-chromosome
ERVB7_2B-LTR_MM
RLTR17B_Mm
MERVL_2A-int
ETnERV2-int
MMERVK9C_I-int}
Join Legend
Serious alignment problem, requires review.
Zero, or more than one, overlaps
Half dove-tail &50 bp
Alignment identity &98%
Alignment length &50 bp
&2 gaps, each gap &25 bp, not marked as an SSR
&0 gaps, each gap &50 bp, not marked as an SSR
&0 gaps, each gap &500 bp, not marked as an SSR
&0 gaps, each gap &500 bp, marked as an SSR
Minor alignment problem.
Exactly one overlap
Half dove-tail &0 bp and <=50bp
Alignment identity &99.1%
Alignment length &2000 bp
&0 gaps, each gap &25 bp, not marked as an SSR
&0 gaps, each gap &50 bp, not marked as an SSR
&0 gaps, each gap &500 bp, not marked as an SSR
&0 gaps, each gap &500 bp, marked as an SSR
Excellent alignment, meets all defined criteria.
Exactly one RuleInfo
Half dove-tail &=0 bp
Alignment identity &=99.1%
Alignment length &=2000 bp
&=0 gaps, each gap &25 bp, not marked as an SSR
&=0 gaps, each gap &50 bp, not marked as an SSR
&=0 gaps, each gap &500 bp, not marked as an SSR
&=0 gaps, each gap &500 bp, marked as an SSR
Certificate submitted, not yet approved.
Certificate submitted and approved.
Valid, contained clone
Join not evaluated due to one accession not being finished.
Curator Links
Alignment for AC and AC
Mismatches = 0, Gaps = 0, Length = 11122
Percent identity = 100%
Score = 2.205e+04 bits (11122), Expect = 0
0 BAC and 0 Fosmid bridging clones.
0 BAC and 0 Fosmid concordant clones.
0 BAC and 0 Fosmid discordant clones.
gatccatttggcaagctgtaaagttctggtgtgtccttgggtcaaaggagtaattcggga 11063
............................................................ 171524
gtgaggattaagtcataagcttcctagagcatttatgatatctcttttttcatagaaagc 11003
............................................................ 171464
atctgtgaagcacattttttttagattgggcatttgagagcctgcctctttcaggctaaa 10943
............................................................ 171404
gcattctgagccttactgaaagaggacacatagccaatgaccctttggtgagaactgaaa 10883
............................................................ 171344
agtctgagttcacaatgctcagactgatatggtctgactttcccttttaggggagaagaa 10823
............................................................ 171284
agaactacagctcctcttttgctccgtgatccttttgaaattgattttgataagatgtat 10763
............................................................ 171224
atatttgtggcctcctaggacagaagggtcacaaagcgacacccaaattcacattgtaat 10703
............................................................ 171164
gattgttttctccctgggcaagagagagcaagtatcatgtcctgtgtttgagatgttacg 10643
............................................................ 171104
tgtaattactttgcataacagggaatgaagtggcacctccatttggaattcatggatgta 10583
............................................................ 171044
tgaatcccactaggaaaatagccaatgctgtgggctcccatttttgtattaatggaagtt 10523
............................................................ 170984
atgtgtttctctctctttggcagtagaaacatgttttgagcactacttagtaaaaacagg 10463
............................................................ 170924
gtggttgatatcctcttggggtgatgacaagaatttgacacctctatggggactttctcc 10403
............................................................ 170864
atctggagataactcaatgccttcttgttctgcaggagaagtttacagggctatttgggt 10343
............................................................ 170804
attagaggcactactctctctcctcctattaaaagtagcatttcagagaatctcatgagg 10283
............................................................ 170744
agacatgaaatgtctgaggctctcttcatgaggaatagagtggtttatgtgcacttttct 10223
............................................................ 170684
ctaggcatggatcatggtttgccactctcatgttctgaatgggaagcttgactgtcccat 10163
............................................................ 170624
tgttcagaacggtccttttctgataagataaaatagatttggatggtctgtattcacctt 10103
............................................................ 170564
ggtatggtggaggacttctgaggccctcctcatgagatggtgagcatccaaaggctcctt 10043
............................................................ 170504
tagcagtatcagaattagtgagggttatggtagtcacagttttaagatttgcaacttttt 9983
............................................................ 170444
ttcttagaagtgcaagatcttaccagcattttggaatagtggcagtgcttccacctagca 9923
............................................................ 170384
tctttttagaggacaggtttcaggcctgcttgatctacagaggaaaacattagtcttatt 9863
............................................................ 170324
ttttgcagtataggatttttgggacaaccccttggatgaggagaataactgagatctttc 9803
............................................................ 170264
ttataaggaatgctagatgtgaaactcaattgtgaagattaaaagggggagatgcttctt 9743
............................................................ 170204
ggaggagtagaggtaggactggattcctttcagcatacttggaagatgtgaggctacctt 9683
............................................................ 170144
tggcagaagagatgcattttaaaacatcaagttctgagaggcagtatctgatatctcctt 9623
............................................................ 170084
ctgaaaatgagacatgtttcaatgtcctttggttagaattggaaatactcgggctcttcc 9563
............................................................ 170024
tctgataagagtaactatctggccatcttcatgagaaggggttggaattaagtccctgtc 9503
............................................................ 169964
tgtacaaagtgacagtctgggaaattctgttgaaaaggaagtacccacagtgtcttttct 9443
............................................................ 169904
agatggcataggttctagaatccccttagctagttgagaaagttctagatattcctgggc 9383
............................................................ 169844
taatgttggtgttccaaggatcccttgatcagatactaaagggctcagcccatctacatt 9323
............................................................ 169784
gtgtttcataagacacagagaccctggaacagatagcaaagattctagagaccctgccac 9263
............................................................ 169724
agattctgaactcttagaaacagattggttacatggcagagattcttccaactctggact 9203
............................................................ 169664
aagtgttgaagaaactggtaatctgggagaattttatgtggctgacaaagattctatgat 9143
............................................................ 169604
ctcttgggtgacagatggtatttcctcacggttttgcatacttggcattgtttctagttt 9083
............................................................ 169544
ttccttcgcagaattagaaagtccaagatcttaggatcagatggtgaatatcctaaagcc 9023
............................................................ 169484
gcatttttctaacaaggtcctggagactcttgggataacaaggaagtttctgaaggccgt 8963
............................................................ 169424
tgggcagatgttgatgttcctactacaccatgacaagacagggaaggtctctgactcaat 8903
............................................................ 169364
acgaaaggttgtgacactctcaaatataattggacagataaaggtgatcctagatgcact 8843
............................................................ 169304
atggtagatgctgaaaattccaaagctcctggtgtaatatttgctattcctggcttgtgt 8783
............................................................ 169244
tttgtacaggtgcaacctttcatattctcctctaaaggacaggcaagggcctccagcttt 8723
............................................................ 169184
ttgaacagataacaaaggtcctggattcacgtgaacagatagggacattgtcaaaagctc 8663
............................................................ 169124
tagggtagatcatagagatcctagggttccctgtccagataaagaaattgccatggatct 8603
............................................................ 169064
tttggaagaacctgacatatctgaagcagttggatctgttttttgtaccctttgtggagt 8543
............................................................ 169004
attcaaatactcatttggtccctggtatgaagtcaaaggcccctctgtaggtttagagat 8483
............................................................ 168944
atctaaaggttcttctgtgtaaggaaaggaatcaaaaggattagggaagaaagtaatgaa 8423
............................................................ 168884
ataagttgggcaaaaattgcaagtgccagaagtgagtcattgtatatcacatatcctgag 8363
............................................................ 168824
atagctgttgaattttttttgtgcacctgatgcaaatgaggaatattctagagtccccta 8303
............................................................ 168764
ggaagatggcaaaggttctacagagccttgtgcagttgccaaaatactcagagattcttg 8243
............................................................ 168704
gtcagatctcaaaatccttgcaatattttgagtagggtgggtatatcactgacacactga 8183
............................................................ 168644
ggaatatggtgagtctgctactgtgtagtgtgtagatgtggactgagttcctatacattg 8123
............................................................ 168584
tttatgtaaagaaggatttgagagcttttgggaagttgtagattgttgtatatacctttg 8063
............................................................ 168524
tggacatgtggacagatataaggtcctctttgcagagagaaagggactcaaactttcatg 8003
............................................................ 168464
agaataatcagaagatgctggagtcacttgttaagtggaaaaaagacccagaggattatg 7943
............................................................ 168404
agaacattcagaacattgtgatgtattcatcattgcctatgctgagatagaaagtttcag 7883
............................................................ 168344
aggtccctgggcagattacaaaggtactggattcccttggccaaatgggaaggtctctgc 7823
............................................................ 168284
atctccttggtacaatgttattgtctaccaagttttggaggtcatggtggcaaagttcct 7763
............................................................ 168224
agagctgatgaagtagtctgagaagatgttacatcttctctcactctttgaaaatgtcct 7703
............................................................ 168164
aaaatactctgtgattctttatattgtgacaatatccctgtgaaacctgttgaattttct 7643
............................................................ 168104
agatttctttggttgaagaaaaaataactttatatgcataaagttccgtcttttgccctg 7583
............................................................ 168044
gaaatttttgggggcttttgaaaagatggaaaagcttctagaaccactgtaggaggtaca 7523
............................................................ 167984
agatgctcctgagaacccagtagaggtgggcaatgtcctacatctgatggttaaggacaa 7463
............................................................ 167924
aagtattcttgagatttctggaaaggtaggaaatgtccagtttcccttgggaaagctggg 7403
............................................................ 167864
gatttttgtgcaaaattttggacagttggcgaaaattcataactgtctgcaaagaagttg 7343
............................................................ 167804
gagcattcaactatcttgagcttatgaaacattttgtgcagtccactgtttagatgtggg 7283
............................................................ 167744
cagtttaggagacccttaggcagaacagaaatgtccaaaaacctcttgggaagatgaaga 7223
............................................................ 167684
acctacagttccttgtgaagatgaagaaatttccagaggcctttgatcaattgacataga 7163
............................................................ 167624
ttctggtagcacttgagtattttgcatagaccccaatcgtcttggggtgggaggcaaagt 7103
............................................................ 167564
tcccacagtctgctttacagatatgtactttcctactgtggcttgtgcagataaacaatg 7043
............................................................ 167504
ccccctcagtgccctgagaatacaaggaagaccctagaatcatgtctttagttttagtca 6983
............................................................ 167444
ctttcagacttctttcttgcgatagacaagaatcccacagttccttgctaagatctcaaa 6923
............................................................ 167384
gatgatggtggcacatgtagtgatatagtaagattcagatgcagtccagcacatctggag 6863
............................................................ 167324
ctgtctgaagtccctcagaaagatggagaatattcatttgcttctgattttgctggagaa 6803
............................................................ 167264
aaagctgaatgcattagagccccttcagcaggtcctgagtgatgtgtcattgcctgggct 6743
............................................................ 167204
aagatggaatgtgtcaggccccctggattgattgcgaatatacttgattccctggaacag 6683
............................................................ 167144
atgggaatatttctacacctccttgagtaaaaaaatgaatgtctgccaggttcttgaggt 6623
............................................................ 167084
gatgatggcaaacttcctagagtaagcaaaacagatttagaagatctgacatcctctttc 6563
............................................................ 167024
actctaggcaaagggcccatggtagtctctttgtgtttacattgtcccaatcccaatata 6503
............................................................ 166964
cctgttgaatcagtcgaaggttctggatacctttggatggatgacacagaactttgcaca 6443
............................................................ 166904
tgcaaatttccaattgcaactgtgcaatttttcttttacccttaagaagttagcaaatgt 6383
............................................................ 166844
tctacatttacagtgatagtggatatccctgaccacctggtgcagataggtagtgttctg 6323
............................................................ 166784
gataacttgggaaatacaaaaacttctcctgattttcctggctagagagaacatattcat 6263
............................................................ 166724
tagtctgtggctaacatgatgagcattgtaagttgagcagatggagaaaatgtgagagcc 6203
............................................................ 166664
ctctagtaattagatggatgtttgaacgaatttggtagagaagacagagtacctataggt 6143
............................................................ 166604
tcttgtttgggtgtgtacagagacccttaggcagatagagaagttcccagaaccctttgt 6083
............................................................ 166544
gcagatgaaaaagatcctaaccttccttctgcaggtcaaaaattcccagaagtacttgaa 6023
............................................................ 166484
cagactggaaatgtccttgttcctgcttatcactttctttgtaacctagagtctccgggc 5963
............................................................ 166424
tacatgggaaaatttcttcaactccctgggcagctatgggatgtccctacatggattctg 5903
............................................................ 166364
aattcaggtaagattgtccagacacctgagtagatgatgagtgtaatgaagaaatttgtg 5843
............................................................ 166304
cagatacattcagctcaagagttgcttatggatatagggaagttgtgacaagtttccgca 5783
............................................................ 166244
aagatatggaggggctcgactagcttgtgttggtgagaaatggccatggggctttgggac 5723
............................................................ 166184
atgttgcaatgtttctgttgcccttagcatacatgaagacattccccaagaacctgagaa 5663
............................................................ 166124
tgaagacaaatgtttatgagtacactgggcagaatctgatattcccagaatctcttggga 5603
............................................................ 166064
cgatgatgactgatcaaaagactgttgagtatatggtgaaaggcctatagaagcctcaac 5543
............................................................ 166004
atatatgctaagtttggtagatagcaaatgtgctagatccttgggactacaaaataagac 5483
............................................................ 165944
tcctgagatcattggtcatattgtgaatgtcctgtatgacttgaaggatgtggcaaaagg 5423
............................................................ 165884
cctgtagtcccttgaacagatggtgagttttcctgagattctaccatgtgtgttgagttc 5363
............................................................ 165824
cctagcttcttttggaaagatgccgaatgttctaaaaaaccctgggaaagatggcaaagc 5303
............................................................ 165764
acccatagtttcttggacaggtatcaagtgttctagagttgttttcttacatctcacagt 5243
............................................................ 165704
tattgaattgcctgatatagtttgctagtttgtggaagtttctgagaacatcatagagaa 5183
............................................................ 165644
gttgaggatttcactttcacttgggaatatgacaatgttgttgagattttttggtttttg 5123
............................................................ 165584
gggtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 5063
............................................................ 165524
gtgtgtgcttgtgtttgtttgtttgtttttatgtcctggtggatgaagaagatctttttt 5003
............................................................ 165464
cagatggaaatttttctgatttcctgttttcaaatttgggagttagcataacccctgtag 4943
............................................................ 165404
gaggcaaaggatctgtagttccttggaaacatggcaaggtatacagatattctactatgt 4883
............................................................ 165344
atgatgagtgccctaccttcttctggaaagatgcagaacgctctaatttccctgtggtat 4823
............................................................ 165284
aactaaaaaaccctcagtcccctggacagtacagattgttctagaggtctttgtttacaa 4763
............................................................ 165224
ctgacaattgttagatttcctgttgtagtgtgaggagatgatggtggtgcagatgatgaa 4703
............................................................ 165164
ggtttcacattccctttggaagataacaatgtttccttagttccctgggtagagggagaa 4643
............................................................ 165104
gatatcatagcctctgtttcagatggtggatgtcatcgggtatcttgcaaagatagagaa 4583
............................................................ 165044
aatgtataaggcttctgaaaagaactgaaatttttcacaggtcctggttcagatggtgaa 4523
............................................................ 164984
attttagagtcctagtttcagatttgggtagtcccatagtccttcgaagagataaagaat 4463
............................................................ 164924
gtttctcagcccctttattagatggaaatatttgagccatcctatgagcaccttgagtag 4403
............................................................ 164864
atcctaaaggccctgttttacgtcttgatggttctacagtcccctgtggtatatagactg 4343
............................................................ 164804
tctcagaatgtctttttcttatttgtattttgtcccttccttttgggatgatataaaaga 4283
............................................................ 164744
ctctagggtcccttgtgccagtgatgacatttgaagagttctttgcaaatggaaatacct 4223
............................................................ 164684
agtgtagatggtgaagaatgcagagtctgtttagaaggtgtgtaagtgggcagtggtcct 4163
............................................................ 164624
tggatatttaccaaagtttctaaggcctgggaagaaaatgagtaaattttctgagcattt 4103
............................................................ 164564
ggtgcagtaagtgagtcttttccaccatcctaggtagatagcaaagaaccttgatgccct 4043
............................................................ 164504
tggcatgatgatgatgatgatgatgataccaaagcctcagtagcaatagcaggtaaggaa 3983
............................................................ 164444
attgctacaggatcctacccagagagcatgttttttggaaaaacagagacatttttcaaa 3923
............................................................ 164384
tgtcctggagatttctgaggatataaatatgtccacatatccacatccacagatggcaaa 3863
............................................................ 164324
tgtcctttataaaccttagaagatgaggaagttgccatatcacctggtcaagaaagagaa 3803
............................................................ 164264
tgagagttccctgtttagatgtggtgagttctggagtctgttgtgcagttaaggatattc 3743
............................................................ 164204
ccacactcccttgaacagaagacaaaagtgctacacttcattctgaggatgaggttgttc 3683
............................................................ 164144
cctcttgccattgggtgagtgacattacatttaggggagaatctgagtcatactgagata 3623
............................................................ 164084
aatctagaactccatgaatgtggggaaaatttgatggcatatcatgatataatggtgaaa 3563
............................................................ 164024
ggctcacaggctctgaagccacctgtttgggtccaggagctacaatggctgaaagggaaa 3503
............................................................ 163964
ttggcagggatcctggtctaagtggcaaagttcctaccatctcttgggcaggttggcagg 3443
............................................................ 163904
ttctgagtttactttggagagataacaatggtaataaattctcttgagtacttggtgaag 3383
............................................................ 163844
tagcagctgtactctgggtagttgtggaacaatccacaggcctttgcaaggacatcaaaa 3323
............................................................ 163784
ttcctgaaaactcatgagttgagattccatgtcctgaaactcattgtgctgatgaggaaa 3263
............................................................ 163724
gatccagatctcctggaaggtggagtgaatgtcctgaataactttttgaagatggaatat 3203
............................................................ 163664
ttttctaaacactttggccagatgacaaagttctgtagttccatgggcacccagatatcc 3143
............................................................ 163604
tgggaaaaatcctgaaaaaccaaaacacctttgcataggtgacaaagtttctagatgccc 3083
............................................................ 163544
atggttaaataatgatggtctcacatatcctagagcagatggtaaatatcctacaacaat 3023
............................................................ 163484
aatgttttagtcagaagcgtttttagatctttagaagatatgaaaattttctggtgtgtt 2963
............................................................ 163424
taggctaaagacaagttctagatgatttttttagatgtggactttccctcaggcccttga 2903
............................................................ 163364
tttcacaaaggagattgtgtagtcctgaagtctgatttgcaaaaggacaaattaccttaa 2843
............................................................ 163304
gcatggtcaaaatgttctgcatcatttgagaaagatgaagaaatttcctgggccagatag 2783
............................................................ 163244
taaacacataagagccttttggttagataatcttgagcctttttggggaaatatggattg 2723
............................................................ 163184
tccaacatgccctttggtagactgaagatgtgagactcacctgaggagaaattgtagctt 2663
............................................................ 163124
ttgatgtttctttggcatcaggggatgtttcaagtctccccccccccttttttttttttt 2603
............................................................ 163064
ttagaaaatgttctgtagtctcctttgttagaaagatcaaatcttaacctgttttttttt 2543
............................................................ 163004
tcttcttctataaactggatgactgtattattttggtagagggaaaatgtctactacttc 2483
............................................................ 162944
ctaccagagaaggcatggaaaagaaacactcttgggtagatggagataattgtaaagcac 2423
............................................................ 162884
cttgttcaaatatcacaaatcctatgaccttctgcacagatggggaaggtcttaatatgt 2363
............................................................ 162824
cttttgtaagtgtgcaagtcttaaccttggctttaaaatgaggggaaggccctagagata 2303
............................................................ 162764
cctgtgtagatatggtttcttctagagcatcatggacaagtgtaaaagatctaagagcct 2243
............................................................ 162704
cataggcaggtagtgaaatttcactacctccctgtctaatgaaagtggcatctccttaga 2183
............................................................ 162644
gcatcatggataggtgtataaggtataaaatccccatgggcaggtagtcgaatttcttga 2123
............................................................ 162584
cctccttgtgtactagtggaagttccaagaaacttttcttcagatggaaaagtggataac 2063
............................................................ 162524
aacttccttatagaattttcaggtgtcatagacagcttgatgggcaaaacagcttccatg 2003
............................................................ 162464
gggccttttgaatatgaattagaacccagaggatttttggcatttgaaaatttctagaga 1943
............................................................ 162404
cttatgctggcatgaagaaggaccaacaggcttttgtgtaggggggtaagaatctatagt 1883
............................................................ 162344
atcttgtttagttggggaagaaggctgatcctccttaggtgatagggaagatctaatagt 1823
............................................................ 162284
ctcctataaagtttggggcagctcaaattttctgaatttggagggatgctgaggaccctc 1763
............................................................ 162224
ttctttagagttcagagtgttaactggtatggtgtccactctaagttgccctttgaaaga 1703
............................................................ 162164
ttgagaaggtctcagactgcctgtggaagatgctgatggttctagttcacttcctgtatg 1643
............................................................ 162104
tgcagaagcgaaaggccttttggaagactcaggaatttctaccacgtcttgagtatgtat 1583
............................................................ 162044
ggaactcacaagatcctattcttggaatggcaaatatccttgagctcctggtgtaggtgt 1523
............................................................ 161984
ggacatttttctctttccttgagcatttattagaggtgtgaggctcacttgggacattgt 1463
............................................................ 161924
gattgcatgtatttccctttggactgaaatagatgatgtgagcacatttcttattggtag 1403
............................................................ 161864
aggactttgaaaggcctcttggtttcatggagaatgactgaaattcccttggtcaggagg 1343
............................................................ 161804
gtcaggtctcaaaataactctagtaggaacagattgcataggacactttggggggaaaga 1283
............................................................ 161744
gaaacatctttggatgtctttctgagaagactttgctctctgccctgttttggcagctgg 1223
............................................................ 161684
caaacattttcaactctgctagggaaaggatgtgggacatgatacttttgggacaaatca 1163
............................................................ 161624
ctgacattacccttgggggaaaaggtttagagccccctttatgtgacttacactcctgtt 1103
............................................................ 161564
gtaggtcctcttgaccagagggatcttctccaaaatgctttggaagaaaattggaaagaa 1043
............................................................ 161504
gagagtcatgtagtgtaatggataaccttttggaaagccttctggaagagcaggcattat 983
............................................................ 161444
gattttactgtcagcacaagtgagtagtctttgagatgcctgtgcagatgttcaatgtcc 923
............................................................ 161384
catagagtattggaaaaatttggatagttccattacctcttggctggataaggaaagacc 863
............................................................ 161324
ctgagcattttggggagaattaggagatcccagatatccttggctagatcgggaagggtg 803
............................................................ 161264
taaggaaccttgaatgtttggagaaaattcctgtccatgttggccagcagaagagtgggc 743
............................................................ 161204
agaagatgccccaggcactgtgtgatcttctttgaactttttaatggcatctccattacc 683
............................................................ 161144
gtgtttggaagatattacaggcattcaggcatccaactagtaaaaatccataggttcttc 623
............................................................ 161084
acccagtggacataggctggcttcttttcacctgtctatgcatgggcacagcagatgagg 563
............................................................ 161024
ccactcattttctagtggaaggctgtaaaacagattgtctggtatccctggttagaggat 503
............................................................ 160964
tactcgtgaactcaggaaaactcagaggaagtgtaaatgtccattttatgttctctttta 443
............................................................ 160904
gatccttcagagggtccagggtcctgttattggatgaatgctttataagagctttgggtt 383
............................................................ 160844
tctgtaacttttctgtaacatgagatcaggtttttttttttttttgtttttttttttgaa 323
............................................................ 160784
tctctcgtcttcatagggttttgggcacctgaacttgtgccgattctgtatatggagccc 263
............................................................ 160724
tggagtcacaaaatccctcgagtctctgctggccaactgcttcccctgttagtttaaggt 203
............................................................ 160664
gtaaaatccagttgggggacagtgaagggagtccaaggctatggaggctgtgaaatcagt 143
............................................................ 160604
tgcggtagggtatcactattctttggactacacttaagggtgttccaggcactggaggat 83
............................................................ 160544
gtgaaacctgtggtatatggtcatagtgtcaagtctgggctgaggctcactgctatttct 23
............................................................ 160484
ccacatgtcttgctatttgatc 1
...................... 160462
TypePoint1Point2Orient1Orient2CuratorCommentTimeIdAlignmentReleases
Switch Points
A11123171583--chenhcTaxid 10090 chrom Y Primary assembly 17:04:13.2607121328380GRCm38, MGSCv37
A1160461--chenhcTaxid 10090 chrom Y Primary assembly 15:02:48.2669110228380
IdTypeDateWhodidComment
41898InitHasAlign06/30/:00f_old_db
181970CreateSwitchPt11/20/:13chenhctpf_builder 1.6
Toolkit wrapper version: built Nov 19 2008 using /netopt/ncbi_tools64/c++.by-date//GCC401-Release64/lib
234303CreateSwitchPt10/31/:48chenhctpf_m_Builder 1.51 Toolkit wrapper version: built Oct 12 2011 using @c_ncbi_runpath@
Accession%idPosition (strand) Accession%idPosition (strand)
Fosmid Ends
Accession%idPosition (strand) Accession%idPosition (strand)
hAT-Charlie
hAT-Charlie
hAT-Charlie
hAT-Charlie
hAT-Charlie
TcMar-Tigger
TcMar-Tigger
TcMar-Tigger
TcMar-Tigger
TcMar-Tigger
TcMar-Tigger
TcMar-Tigger
MuRRS4-int
MuRRS4-int
IAPEY3-int
IAPEY3-int
IAPEY3-int
IAPLTR3-int
IAPLTR3-int
IAPLTR3-int
IAPLTR3-int
IAPLTR3-int
IAPLTR3-int
IAPLTR3-int
IAPLTR3-int
IAPLTR3-int
Low_complexity
Low_complexity
Low_complexity
Low_complexity
Low_complexity
Low_complexity
Low_complexity
Low_complexity
Low_complexity
Low_complexity
Low_complexity
Low_complexity
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Y-chromosome
Y-chromosome
Y-chromosome
Y-chromosome
ERVB7_2B-LTR_MM
RLTR31D_MM
RLTR31D_MM
RLTR31D_MM
RLTR31D_MM
MERVL_2A-int
MMERVK9C_I-int
hAT-Charlie
TcMar-Tigger
TcMar-Tigger
TcMar-Tigger
MuRRS4-int
MuRRS4-int
MuRRS4-int
MuRRS4-int
MuRRS4-int
IAPEY3-int
IAPEY3-int
IAPEY3-int
IAPLTR3-int
IAPLTR3-int
IAPLTR3-int
IAPLTR3-int
Low_complexity
Low_complexity
Low_complexity
Low_complexity
Low_complexity
Low_complexity
Low_complexity
Low_complexity
Low_complexity
Low_complexity
Low_complexity
Low_complexity
Low_complexity
Low_complexity
Low_complexity
Low_complexity
Low_complexity
Low_complexity
Low_complexity
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
MurSatRep1
Y-chromosome
Y-chromosome
Y-chromosome
ERVB7_2B-LTR_MM
RLTR17B_Mm
MERVL_2A-int
ETnERV2-int
MMERVK9C_I-int}
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